Fig. 2. Schematic drawing of the life cycle of the pennate diatom Pseudo-nitzschia multistriata. The vegetative phase is characterized by progressive cell size reduction of the population. When cells reach the sexual size threshold (SST), they can either keep decreasing in size until they
die, or undergo sexual reproduction and escape the size-decreasing process producing large initial cells. The perception of chemical cues deriving from the mating partner brings cells of opposite mating type to pair and haploid gametes are produced following meiosis. Conjugation of
gametes produces two expandable zygotes that develop into auxospores, within which an initial cell of maximum size is synthesized, restoring
the vegetative phase of the cycle. Representative microscopic images of the different stages are shown outside the circle; bar, 10 μm. From [7].
diatoms selected for genome sequencing when this was still a demanding and
time consuming effort. The P. multiseries
genome has been publicly available
since 2011 (https://mycocosm.jgi.doe.
gov/Psemu1/Psemu1.home.html) and
despite being quite fragmented, possibly due to the high content of repetitive
sequences it has represented a valuable
resource used to explore diatom biology in general and in many comparative
genomic analyses. Subsequently, Pseudo-nitzschia transcriptomes became
available through the Marine Microbial
Eukaryotic Transcriptome Sequencing
Project (MMETSP), enlarging the repertoire of sequence resources for the
genus
(https://www.imicrobe.us/#/
search/mmetsp). Currently, thanks to
this initiative, transcriptomics data are
available for P. arenysensis, P. delicatissima, P. fraudulenta, P. australis, P. heimii
and P. pungens. Transcriptomics data
have also been generated in dedicated
studies for other species, namely P. multiseries, P. granii, P. seriata and P. obtusa
[1-3].
2
Here we illustrate genomic resources that are available to the research
community for another toxic Pseudonitzschia species, P. multistriata. We
also provide a few examples of questions that can be addressed by genomic
approaches.
Pseudo-nitzschia multistriata was
described in 1993 by Hideaki Takano
from coastal waters in southern Japan.
The species produces domoic acid [4]
and has been reported from various
regions world-wide (Mediterranean
Sea, Gulf of Mexico, Malaysia, Singapore, New Zealand, the Pacific coast of
Mexico, see [5]). Cells of P. multistriata
can easily be identified in light micros-
copy due to their distinct sigmoid
shape (Figure 1). This species began to
be recorded at the Long Term Ecological Research station Mare Chiara in the
Gulf of Naples in 1993 and since then is
regularly recorded in summer-early autumn. The relative ease of identification
made it a model for a long term study of
population structure using microsatellites [6]. This study required the isolation of a few hundred strains to obtain
their DNA. Availability of all of these
strains represented a great resource facilitating the use of P. multistriata as a
genetic model, allowing genetic crosses
and production of new generations in
the laboratory.
We would like to avail of this opportunity to publicize our request for P. multistriata strains to all of our colleagues working with phytoplankton samples
who may find the species, easily distinguishable from other Pseudo-nitzschia
due to the curved tips and sigmoid shape. Strains from different geographic
locations will greatly enrich ongoing population genomics analyses and could
reveal more about core and dispensable regions of the genome, selection, and
ultimately about the evolution of this toxic species.
HARMFUL ALGAE NEWS NO. 65 / 2020
Harmful Algae News An IOC Newsletter on Toxic Algae and Algal Blooms No. 65 - September 2020 www.ioc-unesco.org/hab Genomic resources for the domoic acid-producing diatom Pseudo-nitzschia multistriata Species responsible for Harmful Algal Blooms (HABs) are among the best studied unicellular microa
Fig. 2. Schematic drawing of the life cycle of the pennate diatom Pseudo-nitzschia multistriata. The vegetative phase is characterized by progressive cell size reduction of the population. When cells reach the sexual size threshold (SST), they can either keep decreasing in size until they die, or un
Fig. 3. The genome browser available on the SZN BioInforma platform. The genome could be sequenced exploiting inbred strains, obtained from the cross of a first generation of sibling strains [7]. Because of the lower polymorphism of inbreds, it was possible to reconstruct long fragments of DNA from
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Pim and Calusa Waterkeepers for assistance in sampling. References 1. Metcalf JS et al (in press). Neurotox Res 2. Matthiensen et al 2000. In: de Koe WJ et al (eds), Mycotoxins and Phycotoxins in Perspective at the Turn of the Millenium. Proc Xth Int IUPAC symposium on Mycotoxins and Phycotoxins, Gu
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Fig. 3 Bayesian trees of Akashiwo sanguinea inferred from (A) LSU rDNA and (B) ITS datasets. Values on nodes represent bootstrap supports of MP, ML, and posterior probabilities of BI Continued from page 14 sulcus extension invading the epicone is visible (Fig. 3B). Cells are slightly pigmented, wi
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Terri Wells (DFO-NAFC, St. Johns, NL); Michel Poulin (Canadian Museum of Nature, Ottawa, ON); Wade A. Rourke (CFIA, Dartmouth, NS). Fig. 4. Heterosigma akashiwo bloom in Kyuquot, British Columbia, 1996 (Photo courtesy of Nicky Haigh, Microthalassia Consultants Inc., Nanaimo, BC) References 1. LoCi
ISSHAs Corner CHA 2021 Hybrid Conference, NEW DATE!! Dear ISSHA members and colleagues: Due to the COVID-19 pandemic and following recommendations of the World Health Organization and National Health Authorities, the 19th International Conference on Harmful Algae has been postponed to October 10-15
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